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4c primer design software  (PrimerDesign Inc)

 
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    PrimerDesign Inc 4c primer design software
    Contact Profile of the BMF <t>4C</t> Viewpoint in Combination with ChIP-Seq Data (A) Heatmap representing chromatin interactions in GM12878 cells at 40.32–40.52 Mb on chromosome 15. Chromatin contact domains called by the Arrowhead algorithm are marked by white lines ( <xref ref-type=Rao et al., 2014 ). The contact domain and CD19 + B cell super-enhancer ( Hnisz et al., 2013 ) encompassing rs539846 are labeled in pink and yellow, respectively. (B) 4C-seq analyses in MEC1 CLL cells indicate the formation of a loop domain between rs539846 and cis -regulatory elements. The 4C viewpoint (green box) lies adjacent to rs539846 (dotted line). A 10-kb masked region (gray box) is also marked. ENCODE ChIP-seq data from GM12878 cells show the correspondence between loop formation and CTCF and RELA transcription factor occupancy. Canonical transcripts and chromosome 15 position also are shown. " width="250" height="auto" />
    4c Primer Design Software, supplied by PrimerDesign Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/4c primer design software/product/PrimerDesign Inc
    Average 90 stars, based on 1 article reviews
    4c primer design software - by Bioz Stars, 2026-04
    90/100 stars

    Images

    1) Product Images from "Genetic Predisposition to Chronic Lymphocytic Leukemia Is Mediated by a BMF Super-Enhancer Polymorphism"

    Article Title: Genetic Predisposition to Chronic Lymphocytic Leukemia Is Mediated by a BMF Super-Enhancer Polymorphism

    Journal: Cell Reports

    doi: 10.1016/j.celrep.2016.07.053

    Contact Profile of the BMF 4C Viewpoint in Combination with ChIP-Seq Data (A) Heatmap representing chromatin interactions in GM12878 cells at 40.32–40.52 Mb on chromosome 15. Chromatin contact domains called by the Arrowhead algorithm are marked by white lines ( <xref ref-type=Rao et al., 2014 ). The contact domain and CD19 + B cell super-enhancer ( Hnisz et al., 2013 ) encompassing rs539846 are labeled in pink and yellow, respectively. (B) 4C-seq analyses in MEC1 CLL cells indicate the formation of a loop domain between rs539846 and cis -regulatory elements. The 4C viewpoint (green box) lies adjacent to rs539846 (dotted line). A 10-kb masked region (gray box) is also marked. ENCODE ChIP-seq data from GM12878 cells show the correspondence between loop formation and CTCF and RELA transcription factor occupancy. Canonical transcripts and chromosome 15 position also are shown. " title="Contact Profile of the BMF 4C Viewpoint in Combination with ChIP-Seq Data (A) Heatmap ..." property="contentUrl" width="100%" height="100%"/>
    Figure Legend Snippet: Contact Profile of the BMF 4C Viewpoint in Combination with ChIP-Seq Data (A) Heatmap representing chromatin interactions in GM12878 cells at 40.32–40.52 Mb on chromosome 15. Chromatin contact domains called by the Arrowhead algorithm are marked by white lines ( Rao et al., 2014 ). The contact domain and CD19 + B cell super-enhancer ( Hnisz et al., 2013 ) encompassing rs539846 are labeled in pink and yellow, respectively. (B) 4C-seq analyses in MEC1 CLL cells indicate the formation of a loop domain between rs539846 and cis -regulatory elements. The 4C viewpoint (green box) lies adjacent to rs539846 (dotted line). A 10-kb masked region (gray box) is also marked. ENCODE ChIP-seq data from GM12878 cells show the correspondence between loop formation and CTCF and RELA transcription factor occupancy. Canonical transcripts and chromosome 15 position also are shown.

    Techniques Used: ChIP-sequencing, Labeling



    Similar Products

    4c primer design software  (PrimerDesign Inc)
    90
    PrimerDesign Inc 4c primer design software
    Contact Profile of the BMF <t>4C</t> Viewpoint in Combination with ChIP-Seq Data (A) Heatmap representing chromatin interactions in GM12878 cells at 40.32–40.52 Mb on chromosome 15. Chromatin contact domains called by the Arrowhead algorithm are marked by white lines ( <xref ref-type=Rao et al., 2014 ). The contact domain and CD19 + B cell super-enhancer ( Hnisz et al., 2013 ) encompassing rs539846 are labeled in pink and yellow, respectively. (B) 4C-seq analyses in MEC1 CLL cells indicate the formation of a loop domain between rs539846 and cis -regulatory elements. The 4C viewpoint (green box) lies adjacent to rs539846 (dotted line). A 10-kb masked region (gray box) is also marked. ENCODE ChIP-seq data from GM12878 cells show the correspondence between loop formation and CTCF and RELA transcription factor occupancy. Canonical transcripts and chromosome 15 position also are shown. " width="250" height="auto" />
    4c Primer Design Software, supplied by PrimerDesign Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/4c primer design software/product/PrimerDesign Inc
    Average 90 stars, based on 1 article reviews
    4c primer design software - by Bioz Stars, 2026-04
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    Contact Profile of the BMF 4C Viewpoint in Combination with ChIP-Seq Data (A) Heatmap representing chromatin interactions in GM12878 cells at 40.32–40.52 Mb on chromosome 15. Chromatin contact domains called by the Arrowhead algorithm are marked by white lines ( <xref ref-type=Rao et al., 2014 ). The contact domain and CD19 + B cell super-enhancer ( Hnisz et al., 2013 ) encompassing rs539846 are labeled in pink and yellow, respectively. (B) 4C-seq analyses in MEC1 CLL cells indicate the formation of a loop domain between rs539846 and cis -regulatory elements. The 4C viewpoint (green box) lies adjacent to rs539846 (dotted line). A 10-kb masked region (gray box) is also marked. ENCODE ChIP-seq data from GM12878 cells show the correspondence between loop formation and CTCF and RELA transcription factor occupancy. Canonical transcripts and chromosome 15 position also are shown. " width="100%" height="100%">

    Journal: Cell Reports

    Article Title: Genetic Predisposition to Chronic Lymphocytic Leukemia Is Mediated by a BMF Super-Enhancer Polymorphism

    doi: 10.1016/j.celrep.2016.07.053

    Figure Lengend Snippet: Contact Profile of the BMF 4C Viewpoint in Combination with ChIP-Seq Data (A) Heatmap representing chromatin interactions in GM12878 cells at 40.32–40.52 Mb on chromosome 15. Chromatin contact domains called by the Arrowhead algorithm are marked by white lines ( Rao et al., 2014 ). The contact domain and CD19 + B cell super-enhancer ( Hnisz et al., 2013 ) encompassing rs539846 are labeled in pink and yellow, respectively. (B) 4C-seq analyses in MEC1 CLL cells indicate the formation of a loop domain between rs539846 and cis -regulatory elements. The 4C viewpoint (green box) lies adjacent to rs539846 (dotted line). A 10-kb masked region (gray box) is also marked. ENCODE ChIP-seq data from GM12878 cells show the correspondence between loop formation and CTCF and RELA transcription factor occupancy. Canonical transcripts and chromosome 15 position also are shown.

    Article Snippet: Using 4C primer design software ( http://mnlab.uchicago.edu/4Cpd/ ), we identified a viewpoint adjacent to SNP rs539846.

    Techniques: ChIP-sequencing, Labeling